Starting submission at Thu May 20 19:40:56 BST 2010 HOST compute-0-10.local


*** Starting PCRPi prediction at: Thu May 20 19:40:56 BST 2010


 === Prediction parameters:
   - Pdb id : 2uzi
   - Chain id : R
   - This is a pdb from our database or uploaded by the user [0,1] (0-> Local 1-> Uploaded): 0
   - Name of the pdbfile if uploaded (otherwise is null)null
   - Run Matlab [0,1] (0 -> No; 1 -> Yes): 1


 === Preparing pdbs input files from features calculation ...
       [Executing log] executing bin/SCRIPTS/checkPDB.pl ...
  == General Info protein chain:	2uzi	2.00	R	166
    - Info: # of chain:	3
    - Info: Chains IDs:	H L R
    - Info: Chain lengths:	114 104 166
    - Info: The chains that are discarded: none
    - Info: Remaining chains after filtering short chains (i.e. less than 50 Aas): H L R
       [Executing log] executing bin/SCRIPTS/check_contact.pl ...
          = Chain 1: R Chain 2: H have # of pairs of CA atoms at less than 10 Ang.: 73
       [Executing log] executing bin/SCRIPTS/check_contact.pl ...
          = Chain 1: R Chain 2: L have # of pairs of CA atoms at less than 10 Ang.: 8
    - The chains that are in contact: R H L
  == Calculating Inputs for Bayesian Network (IE, TOP, BE, CON, 3DCON, ANCCON, ANC3DCON) ...
       [Executing log] executing bin/SCRIPTS/getAnchorMeasures.v5.pl ...
       [Executing log] executing bin/SCRIPTS/get_IE.v1.pl ...
  = Calculating TOP index
       [Executing log] executing bin/SCRIPTS/get_TOP.v1.pl ...
  = Calculating BE index
       [Executing log] executing bin/SCRIPTS/get_ddg.v1.pl ...
  = Calculating evolutionary-based indexes : ANCCON ANC3DCON CON 3DCON
   -- Working with chain id H ...
     - This is a mirror chain ...
    = Checking our database of pre-computed multiple sequence alignments ...
    -- Fasta file found 
    -- ClustalW file found
    -- 3DCA file found
    -- Al2co files found
       [Executing log] executing bin/SCRIPTS/get_con.v1.pl ...
       [Executing log] executing bin/SCRIPTS/get_3Dcon.v1.pl ...
   -- Working with chain id L ...
     - This is a mirror chain ...
    = Checking our database of pre-computed multiple sequence alignments ...
    -- Fasta file found 
    -- ClustalW file found
    -- 3DCA file found
    -- Al2co files found
       [Executing log] executing bin/SCRIPTS/get_con.v1.pl ...
       [Executing log] executing bin/SCRIPTS/get_3Dcon.v1.pl ...
   -- Working with chain id R ...
     - This is the target chain ...
    = Checking our database of pre-computed multiple sequence alignments ...
    -- Fasta file found 
    -- ClustalW file found
    -- 3DCA file found
    -- Al2co files found
       [Executing log] executing bin/SCRIPTS/get_anccon.v1.pl ...
       [Executing log] executing bin/SCRIPTS/get_anc3Dcon.v1.pl ...
       [Executing log] executing bin/SCRIPTS/compine_measures.pl ...
 === Running matlab ...
 === Compile BN attributes and predictions


*** Finishing PCRPi prediction at: Thu May 20 19:45:38 BST 2010


Finish submission at Thu May 20 19:45:39 BST 2010 HOST compute-0-10.local